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A Tool for Composition and Representation of Amino Acids of a Protein Sequence


 
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1. Title Title of document A Tool for Composition and Representation of Amino Acids of a Protein Sequence
 
2. Creator Author's name, affiliation, country Farhana Sarkhawas; Department of Computer Science, Shivaji University, Kolhapur, Maharashtra, India
 
2. Creator Author's name, affiliation, country R. K. Kamat; Department of Computer Science, Shivaji University, Kolhapur, Maharashtra, India
 
3. Subject Discipline(s) Student
 
3. Subject Keyword(s) Amino Acids; Graph; Protein Sequence; Bar Graph; Line Graph
 
3. Subject Subject classification Bioinformatics
 
4. Description Abstract

The tool developed is a graphical representation of protein sequences, constructed based on the composition of amino acids and was displayed in the form of bar graph and line graph. There are many visualization tools available which displays the amino acids in the form of logos, p-h curves, coil etc. which are incomprehensible. The tool described in this paper first calculates the composition of amino acids given a protein sequence and then displays the bar and line graph. The graphical representation displayed by this tool not only avoids decadence, but also has simple and clear visualization no matter how long the sequences are.
 
5. Publisher Organizing agency, location
 
6. Contributor Sponsor(s)
 
7. Date (YYYY-MM-DD) 2014-10-04
 
8. Type Status & genre Peer-reviewed Article
 
8. Type Type
 
9. Format File format PDF
 
10. Identifier Uniform Resource Identifier http://medical.cloud-journals.com/index.php/IJABCB/article/view/Med-176
11. Source Journal/conference title; vol., no. (year) International Journal of Advanced Bioinformatics and Computational Biology; Published Papers
 
12. Language English=en en
 
14. Coverage Geo-spatial location, chronological period, research sample (gender, age, etc.)
 
15. Rights Copyright and permissions

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